EcoCommons attribution
EcoCommons scientific publication citation
Bayraktarov, E., Low-Choy, S., Singh, A.R., Beaumont, L.J., Williams, K.J., Baumgartner, J., Laffan, S.W., Vasco, D., Cosgrove, R., Wraith, J. and Antunes, J.F., 2024. EcoCommons Australia Virtual Laboratories with Cloud Computing: Meeting Diverse User Needs for Ecological Modeling and Decision-making. Environmental Modelling & Software, p.106255.
EcoCommons platform and resources citation
Acknowledgement
EcoCommons Australia is a partnership of nine organisations including NCRIS-funded Australian Research Data Commons (ARDC), the Atlas of Living Australia (ALA), CEBRA at the University of Melbourne, CSIRO’s Land and Water unit, Griffith University, Macquarie University, QCIF, TERN, and the University of NSW. It also involves an investment from the Queensland Government’s Research Infrastructure Co-investment Fund (RICF)
Recommended citation of R & main packages as well as Python and main libraries
citation()
citation(package = "here")
R Core Team (2021). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/.Statistical
5. https://CRAN.R-project.org/package=dismo
version 3.5.1. https://CRAN.R-project.org/package=biomod2
Citations for R packages used within the EcoCommons platform:
Package | R Reference |
abind | Tony Plate and Richard Heiberger (2016). abind: Combine Multidimensional Arrays. R package version 1.4-5. https://CRAN.R-project.org/package=abind |
Acepack | Phil Spector, Jerome Friedman, Robert Tibshirani, Thomas Lumley, Shawn Garbett and Jonathan Baron (2016). acepack: ACE and AVAS for Selecting Multiple Regression Transformations. R package version 1.4.1. https://CRAN.R-project.org/package=acepack |
Ade4 | Dray S, Dufour A (2007). “The ade4 Package: Implementing the Duality Diagram for Ecologists.” _Journal of Statistical Software_, *22*(4), 1-20. doi: 10.18637/jss.v022.i04 (URL: https://doi.org/10.18637/jss.v022.i04). Bougeard S, Dray S (2018). “Supervised Multiblock Analysis in R with the de4Package.” _Journal of Statistical Software_, *86*(1), 1-17. doi: 10.18637/jss.v086.i01 (URL: https://doi.org/10.18637/jss.v086.i01). Chessel D, Dufour A, Thioulouse J (2004). “The ade4 Package – I: One-Table Methods.” _R News_, *4*(1), 5-10. <URL: https://cran.r project.org/doc/Rnews/>. Dray S, Dufour A, Chessel D (2007). “The ade4 Package – II: Two-Table and K-Table Methods.” _R News_, *7*(2), 47-52. <URL: https://cran.r-project.org/doc/Rnews/>. Thioulouse J, Dray S, Dufour A, Siberchicot A, Jombart T, Pavoine S (2018).Multivariate Analysis of Ecological Data with ade4_. Springer. doi: 10.1007/978-1-4939-8850-1 (URL: https://doi.org/10.1007/978-1-4939-8850-1). |
adehabitatHR | Calenge, C. (2006) The package adehabitat for the R software: a tool for the analysis of space and habitat use by animals. Ecological Modelling, 197, 516-519 |
adehabitatLT | Calenge, C. (2006) The package adehabitat for the R software: a tool for the analysis of space and habitat use by animals. Ecological Modelling, 197, 516-519 |
adehabitatMA | Calenge, C. (2006) The package adehabitat for the R software: a tool for the analysis of space and habitat use by animals. Ecological Modelling, 197, 516-519 |
alphahull | Beatriz Pateiro-Lopez, Alberto Rodriguez-Casal and . (2019). alphahull: Generalization of the Convex Hull of a Sample of Points in the Plane. R package version 2.2. https://CRAN.R-project.org/package=alphahull |
Ape | Paradis E. & Schliep K. 2019. ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R. Bioinformatics 35: 526-528. |
Askpass | Jeroen Ooms (2019). askpass: Safe Password Entry for R, Git, and SSH. R package version 1.1. https://CRAN.R-project.org/package=askpass |
Assertthat | Hadley Wickham (2019). assertthat: Easy Pre and Post Assertions. R package version 0.2.1. https://CRAN.R-project.org/package=assertthat |
Backports | Michel Lang and R Core Team (2021). backports: Reimplementations of Functions Introduced Since R-3.0.0. R package version 1.4.1. https://CRAN.R-project.org/package=backports |
base | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
Base64enc | Simon Urbanek (2015). base64enc: Tools for base64 encoding. R package version 0.1-3. https://CRAN.R-project.org/package=base64enc |
BH | Dirk Eddelbuettel, John W. Emerson and Michael J. Kane (2021). BH: Boost C++ Header Files. R package version 1.78.0-0. https://CRAN.R-project.org/package=BH |
BiocManager | Martin Morgan (2021). BiocManager: Access the Bioconductor Project Package Repository. R package version 1.30.16. https://CRAN.R-project.org/package=BiocManager |
Biomod2 | Wilfried Thuiller, Damien Georges, Maya Gueguen, Robin Engler and Frank Breiner (2021). biomod2: Ensemble Platform for Species Distribution Modeling.R package version 3.5.1. https://CRAN.R-project.org/package=biomod2 |
Bit | Jens Oehlschlägel and Brian Ripley (2020). bit: Classes and Methods for Fast Memory-Efficient Boolean Selections. R package version 4.0.4. https://CRAN.R-project.org/package=bit |
Bit64 | Jens Oehlschlägel and Leonardo Silvestri (2020). bit64: A S3 Class for Vectors of 64bit Integers. R package version 4.0.5. https://CRAN.R-project.org/package=bit64 |
Bitops | S original by Steve Dutky initial R port, extensions by Martin Maechler; revised and modified by Steve Dutky (2021). bitops: Bitwise Operations. R package version 1.0-7. https://CRAN.R-project.org/package=bitops |
Blob | Hadley Wickham (2021). blob: A Simple S3 Class for Representing Vectors of Binary Data (‘BLOBS’). R package version 1.2.2. https://CRAN.R-project.org/package=blob |
boot | Angelo Canty and Brian Ripley (2021). boot: Bootstrap R (S-Plus) Functions. R package version 1.3-28. Davison, A. C. & Hinkley, D. V. (1997) Bootstrap Methods and Their Applications. Cambridge University Press, Cambridge. ISBN 0-521-57391-2 |
Brew | Jeffrey Horner and Greg Hunt (2022). brew: Templating Framework for Report Generation. R package version 1.0-7. https://CRAN.R-project.org/package=brew |
brio | Jim Hester and Gábor Csárdi (2021). brio: Basic R Input Output. R package version 1.1.3. https://CRAN.R-project.org/package=brio |
Broom | David Robinson, Alex Hayes and Simon Couch (2022). broom: Convert Statistical Objects into Tidy Tibbles. R package version 0.7.12. https://CRAN.R-project.org/package=broom |
bslib | Carson Sievert and Joe Cheng (2021). bslib: Custom ‘Bootstrap’ ‘Sass’ Themes for ‘shiny’ and ‘rmarkdown’. R package version 0.3.1. https://CRAN.R-project.org/package=bslib |
cachem | Winston Chang (2021). cachem: Cache R Objects with Automatic Pruning. R package version 1.0.6. https://CRAN.R-project.org/package=cachem |
Callr | Gábor Csárdi and Winston Chang (2021). callr: Call R from R. R package version 3.7.0. https://CRAN.R-project.org/package=callr |
car | John Fox and Sanford Weisberg (2019). An {R} Companion to Applied Regression, Third Edition. Thousand Oaks CA: Sage. URL: https://socialsciences.mcmaster.ca/jfox/Books/Companion/ |
carData | John Fox, Sanford Weisberg and Brad Price (2022). carData: Companion to Applied Regression Data Sets. R package version 3.0-5. https://CRAN.R-project.org/package=carData |
Caret | Max Kuhn (2021). caret: Classification and Regression Training. R package version 6.0-90. https://CRAN.R-project.org/package=caret |
cellranger | Jennifer Bryan (2016). cellranger: Translate Spreadsheet Cell Ranges to Rows and Columns. R package version 1.1.0. https://CRAN.R-project.org/package=cellranger |
Checkmate | Lang M (2017). “checkmate: Fast Argument Checks for Defensive R Programming.”The R Journal_, *9*(1), 437-445. <URL: https://journal.r-project.org/archive/2017/RJ-2017-028/index.html>. |
CircStats | S-plus original by Ulric Lund and R port by Claudio Agostinelli (2018). CircStats: Circular Statistics, from “Topics in Circular Statistics” (2001). R package version 0.2-6. https://CRAN.R-project.org/package=CircStats |
class | Venables, W. N. & Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth Edition. Springer, New York. ISBN 0-387-95457-0 |
classInt | Roger Bivand (2020). classInt: Choose Univariate Class Intervals. R package version 0.4-3. https://CRAN.R-project.org/package=classInt |
Cli | Gábor Csárdi (2022). cli: Helpers for Developing Command Line Interfaces. R package version 3.1.1. https://CRAN.R-project.org/package=cli |
Clipr | Matthew Lincoln (2020). clipr: Read and Write from the System Clipboard. R package version 0.7.1. https://CRAN.R-project.org/package=clipr |
Clisymbols | Gábor Csárdi and Sindre Sorhus (2017). clisymbols: Unicode Symbols at the R Prompt. R package version 1.2.0. https://CRAN.R-project.org/package=clisymbols |
cluster | Maechler, M., Rousseeuw, P., Struyf, A., Hubert, M., Hornik, K.(2022). cluster: Cluster Analysis Basics and Extensions. R package version 2.1.3. |
codetools | Luke Tierney (2020). codetools: Code Analysis Tools for R. R package version 0.2-18. https://CRAN.R-project.org/package=codetools |
Colorspace | Zeileis A, Fisher JC, Hornik K, Ihaka R, McWhite CD, Murrell P, Stauffer R, Wilke CO (2020). “colorspace: A Toolbox for Manipulating and Assessing Colors and Palettes.” _Journal of Statistical Software_, *96*(1), 1-49. doi:10.18637/jss.v096.i01 (URL: dttps://doi.org/10.18637/jss.v096.i01). |
colourvalues | David Cooley (2020). colourvalues: Assigns Colours to Values. R package version 0.3.7. https://CRAN.R-project.org/package=colourvalues |
Commonmark | Jeroen Ooms (2018). commonmark: High Performance CommonMark and Github Markdown Rendering in R. R package version 1.7. https://CRAN.R-project.org/package=commonmark |
compiler | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
conditionz | Scott Chamberlain (2019). conditionz: Control How Many Times Conditions are Thrown. R package version 0.1.0. https://CRAN.R-project.org/package=conditionz |
conflicted | Hadley Wickham (2021). conflicted: An Alternative Conflict Resolution Strategy. R package version 1.1.0. https://CRAN.R-project.org/package=conflicted |
conquer | Xuming He, Xiaoou Pan, Kean Ming Tan and Wen-Xin Zhou (2022). conquer: Convolution-Type Smoothed Quantile Regression. R package version 1.3.0. https://CRAN.R-project.org/package=conquer |
ConR | Gilles Dauby (2020). ConR: Computation of Parameters Used in Preliminary Assessment of Conservation Status. R package version 1.3.0. https://CRAN.R-project.org/package=ConR |
Covr | Jim Hester (2020). covr: Test Coverage for Packages. R package version 3.5.1. https://CRAN.R-project.org/package=covr |
cpp11 | Jim Hester and Romain François (2021). cpp11: A C++11 Interface for R’s C Interface. R package version 0.4.2. https://CRAN.R-project.org/package=cpp11 |
Crayon | Gábor Csárdi (2021). crayon: Colored Terminal Output. R package version 1.4.2. https://CRAN.R-project.org/package=crayon |
credentials | Jeroen Ooms (2021). credentials: Tools for Managing SSH and Git Credentials. R package version 1.3.2. https://CRAN.R-project.org/package=credentials |
Crosstalk | oe Cheng and Carson Sievert (2021). crosstalk: Inter-Widget Interactivity for HTML Widgets. R package version 1.2.0. https://CRAN.R-project.org/package=crosstalk |
crul | Scott Chamberlain (2021). crul: HTTP Client. R package version 1.2.0. https://CRAN.R-project.org/package=crul |
Curl | Jeroen Ooms (2021). curl: A Modern and Flexible Web Client for R. R package version 4.3.2. https://CRAN.R-project.org/package=curl |
Cyclocomp | Gabor Csardi (2016). cyclocomp: Cyclomatic Complexity of R Code. R package version 1.1.0. https://CRAN.R-project.org/package=cyclocomp data.table |
Data.table | Matt Dowle and Arun Srinivasan (2021). data.table: Extension of `data.frame`. R package version 1.14.2. https://CRAN.R-project.org/package=data.table |
datasets | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
DBI | R Special Interest Group on Databases (R-SIG-DB), Hadley Wickham and Kirill Müller (2021). DBI: R Database Interface. R package version 1.1.2. https://CRAN.R-project.org/package=DBI |
Dbplyr | Hadley Wickham, Maximilian Girlich and Edgar Ruiz (2021). dbplyr: A ‘dplyr’ Back End for Databases. R package version 2.1.1. https://CRAN.R-project.org/package=dbplyr |
deldir | Rolf Turner (2021). deldir: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation. R package version 1.0-6. https://CRAN.R-project.org/package=deldir |
Desc | Gábor Csárdi, Kirill Müller and Jim Hester (2021). desc: Manipulate DESCRIPTION Files. R package version 1.4.0. https://CRAN.R-project.org/package=desc |
Devtools | Hadley Wickham, Jim Hester, Winston Chang and Jennifer Bryan (2021). devtools: Tools to Make Developing R Packages Easier. R package version 2.4.3. https://CRAN.R-project.org/package=devtools |
dials | Max Kuhn and Hannah Frick (2022). dials: Tools for Creating Tuning Parameter Values. R package version 0.1.1. https://CRAN.R-project.org/package=dials |
DiceDesign | Delphine Dupuy, Celine Helbert, Jessica Franco (2015). DiceDesign and DiceEval: Two R Packages for Design and Analysis of Computer Experiments. Journal of Statistical Software, 65(11), 1-38. URL https://www.jstatsoft.org/v65/i11/ |
dichromat | Thomas Lumley (2022). dichromat: Color Schemes for Dichromats. R package version 2.0-0.1. https://CRAN.R-project.org/package=dichromat |
Diffobj | Brodie Gaslam (2021). diffobj: Diffs for R Objects. R package version 0.3.5. https://CRAN.R-project.org/package=diffobj |
Digest | Dirk Eddelbuettel with contributions by Antoine Lucas, Jarek Tuszynski, Henrik Bengtsson, Simon Urbanek, Mario Frasca, Bryan Lewis, Murray Stokely, Hannes Muehleisen, Duncan Murdoch, Jim Hester, Wush Wu, Qiang Kou, Thierry Onkelinx, Michel Lang, Viliam Simko, Kurt Hornik, Radford Neal, Kendon Bell, Matthew de Queljoe, Ion Suruceanu, Bill Denney, Dirk Schumacher and and Winston Chang. (2021). digest: Create Compact Hash Digests of R Objects. R package version 0.6.29. https://CRAN.R-project.org/package=digest |
Dismo | Robert J. Hijmans, Steven Phillips, John Leathwick and Jane Elith (2021). dismo: Species Distribution Modeling. R package version 1.3-5. https://CRAN.R-project.org/package=dismo |
doParallel | Microsoft Corporation and Steve Weston (2022). doParallel: Foreach Parallel Adaptor for the ‘parallel’ Package. R package version 1.0.17. https://CRAN.R-project.org/package=doParallel |
doSNOW | Microsoft Corporation and Stephen Weston (2022). doSNOW: Foreach Parallel Adaptor for the ‘snow’ Package. R package version 1.0.20. https://CRAN.R-project.org/package=doSNOW |
dotCall64 | F. Gerber, K. Moesinger, R. Furrer (2018), dotCall64: An R package providing an efficient interface to compiled C, C++, and Fortran code supporting long vectors, SoftwareX 7, 217-221, https://doi.org/10.1016/j.softx.2018.06.002. F. Gerber, K. Moesinger, R. Furrer (2017), Extending R packages to support 64-bit compiled code: An illustration with spam64 and GIMMS NDVI3g data, Computer & Geoscience 104, 109-119, https://doi.org/10.1016/j.cageo.2016.11.015. |
Dplyr | Hadley Wickham, Romain François, Lionel Henry and Kirill Müller (2021). dplyr: A Grammar of Data Manipulation. R package version 1.0.7. https://CRAN.R-project.org/package=dplyr |
DT | Yihui Xie, Joe Cheng and Xianying Tan (2021). DT: A Wrapper of the JavaScript Library ‘DataTables’. R package version 0.20. https://CRAN.R-project.org/package=DT |
Dtpylr | Hadley Wickham, Maximilian Girlich, Mark Fairbanks and Ryan Dickerson (2022). dtplyr: Data Table Back-End for ‘dplyr’. R package version 1.2.1. https://CRAN.R-project.org/package=dtplyr |
E1071 | David Meyer, Evgenia Dimitriadou, Kurt Hornik, Andreas Weingessel and Friedrich Leisch (2021). e1071: Misc Functions of the Department of Statistics, Probability Theory Group (Formerly: E1071), TU Wien. R package version 1.7-9. https://CRAN.R-project.org/package=e1071 |
Earth | Stephen Milborrow. Derived from mda:mars by Trevor Hastie and Rob Tibshirani. Uses Alan Miller’s Fortran utilities with Thomas Lumley’s leaps wrapper. (2021). earth: Multivariate Adaptive Regression Splines. R package version 5.3.1. https://CRAN.R-project.org/package=earth |
ecospat | Goslee, S.C. and Urban, D.L. 2007. The ecodist package for dissimilarity-based analysis of ecological data. Journal of Statistical Software 22(7):1-19. |
Ellipsis | Hadley Wickham (2021). ellipsis: Tools for Working with …. R package version 0.3.2. https://CRAN.R-project.org/package=ellipsis |
ENMeval | Kass, J. M., Muscarella, R., Galante, P. J., Bohl, C. L., Pinilla-Buitrago, G. E., Boria, R. A., Soley-Guardia, M., and R. P. Anderson (2021). ENMeval 2.0: Redesigned for customizable and reproducible modeling of species’ niches and distributions. Methods in Ecology and Evolution. https://doi.org/10.1111/2041-210X.13628 |
Evaluate | Hadley Wickham and Yihui Xie (2019). evaluate: Parsing and Evaluation Tools that Provide More Details than the Default. R package version 0.14. https://CRAN.R-project.org/package=evaluate |
Fansi | Brodie Gaslam (2022). fansi: ANSI Control Sequence Aware String Functions. R package version 1.0.2. https://CRAN.R-project.org/package=fansi |
Farver | Thomas Lin Pedersen, Berendea Nicolae and Romain François (2021). farver: High Performance Colour Space Manipulation. R package version 2.1.0. https://CRAN.R-project.org/package=farver |
Fastmap | Winston Chang (2021). fastmap: Fast Data Structures. R package version 1.1.0. https://CRAN.R-project.org/package=fastmap |
Fields | Douglas Nychka, Reinhard Furrer, John Paige, Stephan Sain (2021). “fields: Tools for spatial data.” R package version 13.3, <URL: https://github.com/dnychka/fieldsRPackage>. |
Filehash | Peng RD (2006). “Interacting with data using the filehash package,” R News, 6 (4), 19–24. |
FNN | Alina Beygelzimer, Sham Kakadet, John Langford, Sunil Arya, David Mount and Shengqiao Li (2019). FNN: Fast Nearest Neighbor Search Algorithms and Applications. R package version 1.1.3. https://CRAN.R-project.org/package=FNN |
Foghorn | Francois Michonneau (2021). foghorn: Summarize CRAN Check Results in the Terminal. R package version 1.4.2. https://CRAN.Rproject.org/package=foghorn |
fontawesome | Richard Iannone (2021). fontawesome: Easily Work with ‘Font Awesome’ Icons. R package version 0.2.2. https://CRAN.R-project.org/package=fontawesome |
fontBitstreamVera | Lionel Henry (2017). fontBitstreamVera: Fonts with ‘Bitstream Vera Fonts’ License. R package version 0.1.1. https://CRAN.R-project.org/package=fontBitstreamVera |
fontLiberation | Pravin Satpute and Steve Matteson (2016). fontLiberation: Liberation Fonts. R package version 0.1.0. https://CRAN.R-project.org/package=fontLiberation |
fontquiver | Lionel Henry (2017). fontquiver: Set of Installed Fonts. R package version 0.2.1. https://CRAN.R-project.org/package=fontquiver |
forcats | Hadley Wickham (2021). forcats: Tools for Working with Categorical Variables (Factors). R package version 0.5.1. https://CRAN.R-project.org/package=forcats |
Foreach | Microsoft and Steve Weston (2022). foreach: Provides Foreach Looping Construct. R package version 1.5.2. https://CRAN.R-project.org/package=foreach |
forecast | Hyndman R, Athanasopoulos G, Bergmeir C, Caceres G, Chhay L, O’Hara-Wild M, Petropoulos F, Razbash S, Wang E, Yasmeen F (2022). _forecast: Forecasting functions for time series and linear models_. R package version 8.16, <URL: https://pkg.robjhyndman.com/forecast/>. Hyndman RJ, Khandakar Y (2008). “Automatic time series forecasting: the forecast package for R.” _Journal of Statistical Software_, *26*(3), 1-22. doi: 10.18637/jss.v027.i03 (URL: https://doi.org/10.18637/jss.v027.i03). |
foreign | R Core Team (2022). foreign: Read Data Stored by ‘Minitab’, ‘S’, ‘SAS’, ‘SPSS’, ‘Stata’, ‘Systat’, ‘Weka’, ‘dBase’, …. R package version 0.8-82. https://CRAN.R-project.org/package=foreign |
Formula | Zeileis A, Croissant Y (2010). “Extended Model Formulas in R: Multiple Parts and Multiple Responses.” _Journal of Statistical Software_, *34*(1), 1-13. doi: 10.18637/jss.v034.i01 (URL: https://doi.org/10.18637/jss.v034.i01). |
fracdiff | Martin Maechler (2020). fracdiff: Fractionally Differenced ARIMA aka ARFIMA(P,d,q) Models. R package version 1.5-1. https://CRAN.R-project.org/package=fracdiff |
freetypeharfbuzz | Error in citation(package = “freetypeharfbuzz”) : there is no package called ‘freetypeharfbuzz’ |
Fs | Jim Hester, Hadley Wickham and Gábor Csárdi (2021). fs: Cross-Platform File System Operations Based on ‘libuv’. R package version 1.5.2. https://CRAN.R-project.org/package=fs |
furrr | Davis Vaughan and Matt Dancho (2022). furrr: Apply Mapping Functions in Parallel using Futures. R package version 0.3.0. https://CRAN.R-project.org/package=furrr |
future | Henrik Bengtsson, A Unifying Framework for Parallel and Distributed Processing in R using Futures, The R Journal (2021) 13:2, pages 208-227, doi:10.32614/RJ-2021-048 |
future.apply | Henrik Bengtsson, A Unifying Framework for Parallel and Distributed Processing in R using Futures, The R Journal (2021) 13:2, pages 208-227, doi:10.32614/RJ-2021-048 |
Gam | Trevor Hastie (2020). gam: Generalized Additive Models. R package version 1.20. https://CRAN.R-project.org/package=gam |
Gargle | Jennifer Bryan, Craig Citro and Hadley Wickham (2021). gargle: Utilities for working with Google APIs. R package version 1.2.0. https://CRAN.R-project.org/package=gargle |
Gbm | Brandon Greenwell, Bradley Boehmke, Jay Cunningham and GBM Developers (2020). gbm: Generalized Boosted Regression Models. R package version 2.1.8. https://CRAN.R-project.org/package=gbm |
gdalUtils | Jonathan Asher Greenberg and Matteo Mattiuzzi (2020). gdalUtils: Wrappers for the Geospatial Data Abstraction Library (GDAL) Utilities. R package version 2.0.3.2. https://CRAN.R-project.org/package=gdalUtils |
Gdata | Gregory R. Warnes, Ben Bolker, Gregor Gorjanc, Gabor Grothendieck, Ales Korosec, Thomas Lumley, Don MacQueen, Arni Magnusson, Jim Rogers and others (2017). gdata: Various R Programming Tools for Data Manipulation. R package version 2.18.0. https://CRAN.R-project.org/package=gdata |
Gdtools | David Gohel, Hadley Wickham, Lionel Henry and Jeroen Ooms (2021). gdtools: “Utilities for Graphical Rendering. R package version 0.2.3. Utilities for Graphical Rendering. R package version 0.2.3. https://CRAN.R-project.org/package=gdtools “ |
generics | Hadley Wickham, Max Kuhn and Davis Vaughan (2022). generics: Common S3 Generics not Provided by Base R Methods Related to Model Fitting. R package version 0.1.2. https://CRAN.R-project.org/package=generics |
geojsonsf | David Cooley (2022). geojsonsf: GeoJSON to Simple Feature Converter. R package version 2.0.2. https://CRAN.R-project.org/package=geojsonsf |
geometries | David Cooley (2020). geometries: Convert Between R Objects and Geometric Structures. R package version 0.2.0. https://CRAN.R-project.org/package=geometries |
geosphere | Robert J. Hijmans (2021). geosphere: Spherical Trigonometry. R package version 1.5-14. https://CRAN.R-project.org/package=geosphere |
gert | Jeroen Ooms (2022). gert: Simple Git Client for R. R package version 1.6.0. https://CRAN.R-project.org/package=gert |
ggdendro | Andrie de Vries and Brian D. Ripley (2022). ggdendro: Create Dendrograms and Tree Diagrams Using ‘ggplot2’. R package version 0.1.23. https://CRAN.R-project.org/package=ggdendro |
ggmap | D. Kahle and H. Wickham. ggmap: Spatial Visualization with ggplot2. The R Journal, 5(1), 144-161. URL http://journal.r-project.org/archive/2013-1/kahle-wickham.pdf |
ggplot2 | H. Wickham. ggplot2: Elegant Graphics for Data Analysis. Springer-Verlag New York, 2016. |
ggplot2movies | Hadley Wickham (2015). ggplot2movies: Movies Data. R package version 0.0.1. https://CRAN.R-project.org/package=ggplot2movies |
gh | Jennifer Bryan and Hadley Wickham (2021). gh: ‘GitHub’ ‘API’. R package version 1.3.0. https://CRAN.R-project.org/package=gh |
Git2r | Widgren, S., et al. (2020) git2r: Provides Access to Git Repositories. R package version 0.27.1. URL https://CRAN.R-project.org/package=git2r. |
gitcreds | Gábor Csárdi (2020). gitcreds: Query ‘git’ Credentials from ‘R’. R package version 0.1.1. https://CRAN.R-project.org/package=gitcreds |
glmnet | Jerome Friedman, Trevor Hastie, Robert Tibshirani (2010). Regularization Paths for Generalized Linear Models via Coordinate Descent. Journal of Statistical Software, 33(1), 1-22. URL https://www.jstatsoft.org/v33/i01/. |
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glue | Jim Hester and Jennifer Bryan (2022). glue: Interpreted String Literals. R package version 1.6.2. https://CRAN.R-project.org/package=glue |
Gmailr | Jim Hester and Jennifer Bryan (2021). gmailr: Access the ‘Gmail’ ‘RESTful’ API. R package version 1.0.1. https://CRAN.R-project.org/package=gmailr |
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googledrive | Lucy D’Agostino McGowan and Jennifer Bryan (2021). googledrive: An Interface to Google Drive. R package version 2.0.0. https://CRAN.R-project.org/package=googledrive |
googlePolylines | David Cooley (2020). googlePolylines: Encoding Coordinates into ‘Google’ Polylines. R package version 0.8.2. https://CRAN.R-project.org/package=googlePolylines |
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graphics | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
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Gridextra | Baptiste Auguie (2017). gridExtra: Miscellaneous Functions for “Grid” Graphics. R package version2.3. https://CRAN.R-project.org/package=gridExtra |
gtable | Hadley Wickham and Thomas Lin Pedersen (2019). gtable: Arrange ‘Grobs’ in Tables. R package version 0.3.0. https://CRAN.R-project.org/package=gtable |
gtools | Gregory R. Warnes, Ben Bolker and Thomas Lumley (2021). gtools: Various R Programming Tools. R package version 3.9.2. https://CRAN.R-project.org/package=gtools |
hardhat | Davis Vaughan and Max Kuhn (2022). hardhat: Construct Modeling Packages. R package version 0.2.0. https://CRAN.R-project.org/package=hardhat |
haven | Hadley Wickham, Evan Miller and Danny Smith (2022). haven: Import and Export ‘SPSS’, ‘Stata’ and ‘SAS’ Files. R package version 2.5.0. https://CRAN.R-project.org/package=haven |
hexbin | Dan Carr, ported by Nicholas Lewin-Koh, Martin Maechler and contains copies of lattice functions written by Deepayan Sarkar (2021). hexbin: Hexagonal Binning Routines. R package version 1.28.2. https://CRAN.R-project.org/package=hexbin |
highlight | Romain Francois (2019). highlight: Syntax Highlighter. R package version 0.5.0. https://CRAN.R-project.org/package=highlight |
highr | Yihui Xie and Yixuan Qiu (2021). highr: Syntax Highlighting for R Source Code. R package version 0.9. https://CRAN.R-project.org/package=highr |
Hmisc | Frank E Harrell Jr (2021). Hmisc: Harrell Miscellaneous. R package version 4.6-0. https://CRAN.R-project.org/package=Hmisc |
hms | Kirill Müller (2021). hms: Pretty Time of Day. R package version 1.1.1. https://CRAN.R-project.org/package=hms |
htmlTable | Max Gordon, Stephen Gragg and Peter Konings (2022). htmlTable: Advanced Tables for Markdown/HTML. R package version 2.4.0. https://CRAN.R-project.org/package=htmlTable |
htmltools | Joe Cheng, Carson Sievert, Barret Schloerke, Winston Chang, Yihui Xie and Jeff Allen (2021). htmltools: Tools for HTML. R package version 0.5.2. https://CRAN.R-project.org/package=htmltools |
htmlwidgets | Ramnath Vaidyanathan, Yihui Xie, JJ Allaire, Joe Cheng, Carson Sievert and Kenton Russell (2021). htmlwidgets: HTML Widgets for R. R package version 1.5.4. https://CRAN.R-project.org/package=htmlwidgets |
httpcode | Scott Chamberlain (2020). httpcode: ‘HTTP’ Status Code Helper. R package version 0.3.0. https://CRAN.R-project.org/package=httpcode |
httpuv | Joe Cheng and Winston Chang (2022). httpuv: HTTP and WebSocket Server Library. R package version 1.6.5. https://CRAN.R-project.org/package=httpuv |
httr | Hadley Wickham (2020). httr: Tools for Working with URLs and HTTP. R package version 1.4.2.https://CRAN.R-project.org/package=httr |
hunspell | Jeroen Ooms (2020). hunspell: High-Performance Stemmer, Tokenizer, and Spell Checker. R package version 3.0.1. https://CRAN.R-project.org/package=hunspell |
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igraph | Jeroen Ooms (2020). hunspell: High-Performance Stemmer, Tokenizer, and Spell Checker. R package version 3.0.1. https://CRAN.R-project.org/package=hunspell |
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intervals | Richard Bourgon (2020). intervals: Tools for Working with Points and Intervals. R package version 0.15.2. https://CRAN.R-project.org/package=intervals |
ipred | Andrea Peters and Torsten Hothorn (2021). ipred: Improved Predictors. R package version 0.9-12. https://CRAN.R-project.org/package=ipred |
IRdisplay | Thomas Kluyver, Philipp Angerer and Jan Schulz (2022). IRdisplay: ‘Jupyter’ Display Machinery. R package version 1.1. https://CRAN.R-project.org/package=Irdisplay |
IRkernel | Thomas Kluyver, Philipp Angerer, Jan Schulz and Karthik Ram (2022). IRkernel: Native R Kernel for the ‘Jupyter Notebook’. R package version 1.3. https://CRAN.R-project.org/package=Irkernel |
isoband | Claus O. Wilke and Thomas Lin Pedersen (2021). isoband: Generate Isolines and Isobands from Regularly Spaced Elevation Grids. R package version 0.2.5. https://CRAN.R-project.org/package=isoband |
iterators | Revolution Analytics and Steve Weston (2022). iterators: Provides Iterator Construct. R package version 1.0.14. https://CRAN.R-project.org/package=iterators |
jpeg | Simon Urbanek (2021). jpeg: Read and write JPEG images. R package version 0.1-9. https://CRAN.R-project.org/package=jpeg |
jquerylib | Carson Sievert and Joe Cheng (2021). jquerylib: Obtain ‘jQuery’ as an HTML Dependency Object. R package version 0.1.4. https://CRAN.R-project.org/package=jquerylib |
jsonify | David Cooley (2020). jsonify: Convert Between ‘R’ Objects and Javascript Object Notation (JSON). R package version 1.2.1. https://CRAN.R-project.org/package=jsonify |
jsonlite | Jeroen Ooms (2014). The jsonlite Package: A Practical and Consistent Mapping Between JSON Data and R Objects. arXiv:1403.2805 [stat.CO] URL https://arxiv.org/abs/1403.2805. |
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KernSmooth | Matt Wand (2021). KernSmooth: Functions for Kernel Smoothing Supporting Wand & Jones (1995). R package version 2.23-20. https://CRAN.R-project.org/package=KernSmooth |
knitr | Yihui Xie (2021). knitr: A General-Purpose Package for Dynamic Report Generation in R. R package version 1.37. Yihui Xie (2015) Dynamic Documents with R and knitr. 2nd edition. Chapman and Hall/CRC. ISBN 978-1498716963 Yihui Xie (2014) knitr: A Comprehensive Tool for Reproducible Research in R. In Victoria Stodden, Friedrich Leisch and Roger D. Peng, editors, Implementing Reproducible Computational Research. Chapman and Hall/CRC. ISBN 978-1466561595 |
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labeling | Justin Talbot, (2020). labeling: Axis Labeling. R package version 0.4.2. https://CRAN.R-project.org/package=labeling |
Lahman | Michael Friendly, Chris Dalzell, Martin Monkman and Dennis Murphy (2021). Lahman: Sean ‘Lahman’ Baseball Database. R package version 9.0-0. https://CRAN.R-project.org/package=Lahman |
later | Winston Chang and Joe Cheng (2021). later: Utilities for Scheduling Functions to Execute Later with Event Loops. R package version 1.3.0. https://CRAN.R-project.org/package=later |
lattice | Sarkar, Deepayan (2008) Lattice: Multivariate Data Visualization with R. Springer, New York. ISBN 978-0-387-75968-5 |
latticeExtra | Deepayan Sarkar and Felix Andrews (2019). latticeExtra: Extra Graphical Utilities Based on Lattice. R package version 0.6-29. https://CRAN.R-project.org/package=latticeExtra |
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lazyeval | Hadley Wickham (2019). lazyeval: Lazy (Non-Standard) Evaluation. R package version 0.2.2. https://CRAN.R-project.org/package=lazyeval |
leafem | Tim Appelhans (2022). leafem: ‘leaflet’ Extensions for ‘mapview’. R package version 0.2.0. https://CRAN.R-project.org/package=leafem |
leaflet | Joe Cheng, Bhaskar Karambelkar and Yihui Xie (2022). leaflet: Create Interactive Web Maps with the JavaScript ‘Leaflet’ Library. R package version 2.1.1. https://CRAN.R-project.org/package=leaflet |
leaflet.providers | Leslie Huang (2019). leaflet.providers: Leaflet Providers. R package version 1.9.0. https://CRAN.R-project.org/package=leaflet.providers |
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lubridate | Garrett Grolemund, Hadley Wickham (2011). Dates and Times Made Easy with lubridate. Journal of Statistical Software, 40(3), 1-25. URL https://www.jstatsoft.org/v40/i03/. |
lwgeom | Edzer Pebesma (2021). lwgeom: Bindings to Selected ‘liblwgeom’ Functions for Simple Features. R package version 0.2-8. https://CRAN.R-project.org/package=lwgeom |
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mapdata | Original S code by Richard A. Becker and Allan R. Wilks. R version by Ray Brownrigg. (2018). mapdata: Extra Map Databases. R package version 2.3.0. https://CRAN.R-project.org/package=mapdata |
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maps | Original S code by Richard A. Becker, Allan R. Wilks. R version by Ray Brownrigg. Enhancements by Thomas P Minka and Alex Deckmyn. (2021). maps: Draw Geographical Maps. R package version 3.4.0. https://CRAN.R-project.org/package=maps |
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MASS | Venables, W. N. & Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth Edition. Springer, New York. ISBN 0-387-95457-0 |
Matrix | Douglas Bates, Martin Maechler and Mikael Jagan (2022). Matrix: Sparse and Dense Matrix Classes and Methods. R package version 1.4-1. https://CRAN.R-project.org/package=Matrix |
MatrixModels | Douglas Bates and Martin Maechler (2021). MatrixModels: Modelling with Sparse and Dense Matrices. R package version 0.5-0. https://CRAN.R-project.org/package=MatrixModels |
matrixStats | Henrik Bengtsson (2022). matrixStats: Functions that Apply to Rows and Columns of Matrices (and to Vectors). R package version 0.62.0. https://CRAN.R-project.org/package=matrixStats |
maxnet | Steven Phillips (2021). maxnet: Fitting ‘Maxent’ Species Distribution Models with ‘glmnet’. R package version 0.1.4. https://CRAN.R-project.org/package=maxnet |
mclust | Scrucca L., Fop M., Murphy T. B. and Raftery A. E. (2016) mclust 5: clustering, classification and density estimation using Gaussian finite mixture models The R Journal 8/1, pp. 289-317 |
mda | S original by Trevor Hastie & Robert Tibshirani. Original R port by Friedrich Leisch, Kurt Hornik and Brian D. Ripley. Balasubramanian Narasimhan has contributed to the upgrading of the code. (2020). mda: Mixture and Flexible Discriminant Analysis. R package version 0.5-2. https://CRAN.R-project.org/package=mda |
memoise | Hadley Wickham, Jim Hester, Winston Chang, Kirill Müller and Daniel Cook (2021). memoise: ‘Memoisation’ of Functions. R package version 2.0.1. https://CRAN.R-project.org/package=memoise |
methods | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
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MigClim | Warning in install.packages : package ‘MigClim’ is not available for this version of R |
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mmap | Jeffrey A. Ryan (2020). mmap: Map Pages of Memory. R package version 0.6-19. https://CRAN.R-project.org/package=mmap |
mockery | Warning in install.packages : package ‘mockey’ is not available for this version of R |
modeldata | Max Kuhn (2021). modeldata: Data Sets Used Useful for Modeling Packages. R package version 0.1.1. https://CRAN.R-project.org/package=modeldata |
ModelMetrics | Tyler Hunt (2020). ModelMetrics: Rapid Calculation of Model Metrics. R package version 1.2.2.2. https://CRAN.R-project.org/package=ModelMetrics |
modelr | Hadley Wickham (2020). modelr: Modelling Functions that Work with the Pipe. R package version 0.1.8. https://CRAN.R-project.org/package=modelr |
multcomp | Torsten Hothorn, Frank Bretz and Peter Westfall (2008). Simultaneous Inference in General Parametric Models. Biometrical Journal 50(3), 346–363. |
multicool | James Curran, Aaron Williams, Jerome Kelleher and Dave Barber (2021). multicool: Permutations of Multisets in Cool-Lex Order. R package version 0.1-12. https://CRAN.R-project.org/package=multicool |
munsell | Charlotte Wickham (2018). munsell: Utilities for Using Munsell Colours. R package version 0.5.0. https://CRAN.R-project.org/package=munsell |
mvtnorm | Alan Genz, Frank Bretz, Tetsuhisa Miwa, Xuefei Mi, Friedrich Leisch, Fabian Scheipl, Torsten Hothorn (2021). mvtnorm: Multivariate Normal and t Distributions. R package version 1.1-3. URL http://CRAN.R-project.org/package=mvtnorm Alan Genz, Frank Bretz (2009), Computation of Multivariate Normal and t Probabilities. Lecture Notes in Statistics, Vol. 195., Springer-Verlag, Heidelberg. ISBN 978-3-642-01688-2 |
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nlme | José Pinheiro, Douglas Bates and R Core Team (2022). nlme: Linear and Nonlinear Mixed Effects Models. R package version 3.1-157. https://CRAN.R-project.org/package=nlme |
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nnet | Venables, W. N. & Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth Edition. Springer, New York. ISBN 0-387-95457-0 |
numDeriv | Paul Gilbert and Ravi Varadhan (2019). numDeriv: Accurate Numerical Derivatives. R package version 2016.8-1.1. https://CRAN.R-project.org/package=numDeriv |
nycflights13 | Hadley Wickham (2021). nycflights13: Flights that Departed NYC in 2013. R package version 1.0.2. https://CRAN.R-project.org/package=nycflights13 |
oai | Scott Chamberlain and Michal Bojanowski (2021). oai: General Purpose ‘Oai-PMH’ Services Client. R package version 0.3.2. https://CRAN.R-project.org/package=oai |
openssl | Jeroen Ooms (2021). openssl: Toolkit for Encryption, Signatures and Certificates Based on OpenSSL. R package version 1.4.6. https://CRAN.R-project.org/package=openssl |
openxlsx | Philipp Schauberger and Alexander Walker (2021). openxlsx: Read, Write and Edit xlsx Files. R package version 4.2.5. https://CRAN.R-project.org/package=openxlsx |
ordinal | Christensen, R. H. B. (2019). ordinal – Regression Models for Ordinal Data. R package version 2019.12-10. https://CRAN.R-project.org/package=ordinal. |
parallel | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
parallelly | Henrik Bengtsson (2022). parallelly: Enhancing the ‘parallel’ Package. R package version 1.31.1. https://CRAN.R-project.org/package=parallelly |
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parsnip | Max Kuhn and Davis Vaughan (2022). parsnip: A Common API to Modeling and Analysis Functions. R package version 0.2.1. https://CRAN.R-project.org/package=parsnip |
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permute | Gavin L. Simpson (2022). permute: Functions for Generating Restricted Permutations of Data. R package version 0.9-7. https://CRAN.R-project.org/package=permute |
pillar | Kirill Müller and Hadley Wickham (2022). pillar: Coloured Formatting for Columns. R package version 1.7.0. https://CRAN.R-project.org/package=pillar |
Pingr | Gábor Csárdi (2020). pingr: Check if a Remote Computer is Up. R package version 2.0.1. https://CRAN.R-project.org/package=pingr |
pkgbuild | Hadley Wickham, Jim Hester and Gábor Csárdi (2021). pkgbuild: Find Tools Needed to Build R Packages. R package version 1.3.1. https://CRAN.R-project.org/package=pkgbuild |
pkgconfig | Gábor Csárdi (2019). pkgconfig: Private Configuration for ‘R’ Packages. R package version 2.0.3. https://CRAN.R-project.org/package=pkgconfig |
pkgdown | Hadley Wickham, Jay Hesselberth and Maëlle Salmon (2022). pkgdown: Make Static HTML Documentation for a Package. R package version 2.0.3. https://CRAN.R-project.org/package=pkgdown |
pkgload | Hadley Wickham, Winston Chang, Jim Hester and Lionel Henry (2021). pkgload: Simulate Package Installation and Attach. R package version 1.2.4. https://CRAN.R-project.org/package=pkgload |
plogr | Kirill Müller (2018). plogr: The ‘plog’ C++ Logging Library. R package version 0.2.0. https://CRAN.R-project.org/package=plogr |
plotmo | Stephen Milborrow (2021). plotmo: Plot a Model’s Residuals, Response, and Partial Dependence Plots. R package version 3.6.1. https://CRAN.R-project.org/package=plotmo |
plotrix | Lemon, J. (2006) Plotrix: a package in the red light district of R. R-News, 6(4): 8-12. |
plyr | Hadley Wickham (2011). The Split-Apply-Combine Strategy for Data Analysis. Journal of Statistical Software, 40(1), 1-29. URL http://www.jstatsoft.org/v40/i01/. |
png | Simon Urbanek (2013). png: Read and write PNG images. R package version 0.1-7. https://CRAN.R-project.org/package=png |
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polyclip | Angus Johnson and Adrian Baddeley (2019). polyclip: Polygon Clipping. R package version 1.10-0. https://CRAN.R-project.org/package=polyclip |
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prettyunits | Gabor Csardi (2020). prettyunits: Pretty, Human Readable Formatting of Quantities. R package version 1.1.1. https://CRAN.R-project.org/package=prettyunits |
pROC | Xavier Robin, Natacha Turck, Alexandre Hainard, Natalia Tiberti, Frédérique Lisacek, Jean-Charles Sanchez and Markus Müller (2011). pROC: an open-source package for R and S+ to analyze and compare ROC curves. BMC Bioinformatics, 12, p. 77. DOI: 10.1186/1471-2105-12-77 http://www.biomedcentral.com/1471-2105/12/77/ |
processx | Gábor Csárdi and Winston Chang (2021). processx: Execute and Control System Processes. R package version 3.5.2. https://CRAN.R-project.org/package=processx |
prodlim | Thomas A. Gerds (2019). prodlim: Product-Limit Estimation for Censored Event History Analysis. R package version 2019.11.13. https://CRAN.R-project.org/package=prodlim |
profvis | Thomas A. Gerds (2019). prodlim: Product-Limit Estimation for Censored Event History Analysis. R package version 2019.11.13. https://CRAN.R-project.org/package=prodlim |
progress | Gábor Csárdi and Rich FitzJohn (2019). progress: Terminal Progress Bars. R package version 1.2.2. https://CRAN.R-project.org/package=progress |
progressr | Henrik Bengtsson (2021). progressr: An Inclusive, Unifying API for Progress Updates. R package version 0.10.0. https://CRAN.R-project.org/package=progressr |
promises | Joe Cheng (2021). promises: Abstractions for Promise-Based Asynchronous Programming. R package version 1.2.0.1. https://CRAN.R-project.org/package=promises |
proxy | David Meyer and Christian Buchta (2021). proxy: Distance and Similarity Measures. R package version 0.4-26. https://CRAN.R-project.org/package=proxy |
ps | Jay Loden, Dave Daeschler, Giampaolo Rodola’ and Gábor Csárdi (2021). ps: List, Query, Manipulate System Processes. R package version 1.6.0. https://CRAN.R-project.org/package=ps |
purrr | Lionel Henry and Hadley Wickham (2020). purrr: Functional Programming Tools. R package version 0.3.4. https://CRAN.R-project.org/package=purrr |
quadprog | S original by Berwin A. Turlach R port by Andreas Weingessel <Andreas.Weingessel@ci.tuwien.ac.at> Fortran contributions from Cleve Moler dpodi/LINPACK) (2019). quadprog: Functions to Solve Quadratic Programming Problems. R package version 1.5-8. https://CRAN.R-project.org/package=quadprog |
quantmod | Jeffrey A. Ryan and Joshua M. Ulrich (2022). quantmod: Quantitative Financial Modelling Framework. R package version 0.4.20. https://CRAN.R-project.org/package=quantmod |
quantreg | Roger Koenker (2022). quantreg: Quantile Regression. R package version 5.88. https://CRAN.R-project.org/package=quantreg |
R.methodsS3 | Bengtsson, H. The R.oo package – Object-Oriented Programming with References Using Standard R Code, Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), ISSN 1609-395X, Hornik, K.; Leisch, F. & Zeileis, A. (ed.), 2003 |
R.oo | Bengtsson, H. The R.oo package – Object-Oriented Programming with References Using Standard R Code, Proceedings of the 3rd International Workshop on Distributed Statistical Computing (DSC 2003), ISSN 1609-395X, Hornik, K.; Leisch, F. & Zeileis, A. (ed.), 2003 |
R.utils | Henrik Bengtsson (2021). R.utils: Various Programming Utilities. R package version 2.11.0. https://CRAN.R-project.org/package=R.utils |
R6 | Winston Chang (2021). R6: Encapsulated Classes with Reference Semantics. R package version 2.5.1. https://CRAN.R-project.org/package=R6 |
randomForest | A. Liaw and M. Wiener (2002). Classification and Regression by randomForest. R News 2(3), 18–22. |
randomForestSRC |
Ishwaran H. and Kogalur U.B. (2022). Fast Unified Random Forests for Survival, Regression, and Classification (RF-SRC), R package version 3.1.0. Ishwaran H. and Kogalur U.B. (2007). Random survival forests for R. R News 7(2), 25–31. Ishwaran H., Kogalur U.B., Blackstone E.H. and Lauer M.S. (2008). Random survival forests. Ann. Appl. Statist. 2(3), 841–860. |
rangeModelMetadata | Cory Merow, Brian Maitner, Hannah Owens, Jamie Kass, Brian Enquist, Rob Guralnik, Damaris Zurrell and Christian Koenig (2021). rangeModelMetadata: Provides Templates for Metadata Files Associated with Species Range Models. R package version 0.1.4. https://CRAN.R-project.org/package=rangeModelMetadata |
rapidjsonr | David Cooley (2020). rapidjsonr: ‘Rapidjson’ C++ Header Files. R package version 1.2.0. https://CRAN.R-project.org/package=rapidjsonr |
rappdirs | Sridhar Ratnakumar, Trent Mick and Trevor Davis (2021). rappdirs: Application Directories: Determine Where to Save Data, Caches, and Logs. R package version 0.3.3. https://CRAN.R-project.org/package=rappdirs |
raster | Robert J. Hijmans (2020). raster: Geographic Data Analysis and Modeling. R package version 3.1-5. https://CRAN.Rproject.org/package=raster |
rasterVis | Oscar Perpinan Lamigueiro and Robert Hijmans (2022), rasterVis. R package version 0.51.2. |
rbison | Scott Chamberlain (2020). rbison: Interface to the ‘USGS’ ‘BISON’ API. R package version 1.0.0. https://CRAN.R-project.org/package=rbison |
rcmdcheck | Gábor Csárdi (2021). rcmdcheck: Run ‘R CMD check’ from ‘R’ and Capture Results. R package version 1.4.0. https://CRAN.Rproject.org/package=rcmdcheck |
RColorBrewer | Erich Neuwirth (2014). RColorBrewer: ColorBrewer Palettes. R package version 1.1-2. https://CRAN.R-project.org/package=RColorBrewer |
Rcpp | Dirk Eddelbuettel and Romain Francois (2011). Rcpp: Seamless R and C++ Integration. Journal of Statistical Software, 40(8), 1-18. URL http://www.jstatsoft.org/v40/i08/. Eddelbuettel, Dirk (2013) Seamless R and C++ Integration with Rcpp. Springer, New York. ISBN 978-1-4614-6867-7. Dirk Eddelbuettel and James Joseph Balamuta (2017). Extending R with C++: A Brief Introduction to Rcpp. PeerJ Preprints 5:e3188v1. URL https://doi.org/10.7287/peerj.preprints.3188v1. |
RcppArmadillo | Dirk Eddelbuettel, Conrad Sanderson (2014). RcppArmadillo: Accelerating R with high-performance C++ linear algebra. Computational Statistics and Data Analysis, Volume 71, March 2014, pages 1054-1063. URL http://dx.doi.org/10.1016/j.csda.2013.02.005 |
RcppEigen | Douglas Bates, Dirk Eddelbuettel (2013). Fast and Elegant Numerical Linear Algebra Using the RcppEigen Package. Journal of Statistical Software, 52(5), 1-24. URL https://www.jstatsoft.org/v52/i05/. |
RCurl | Duncan Temple Lang (2022). RCurl: General Network (HTTP/FTP/…) Client Interface for R. R package version 1.98-1.6. https://CRAN.R-project.org/package=Rcurl |
readr | Hadley Wickham, Jim Hester and Romain Francois (2018). readr: Read Rectangular Text Data. R package version 1.3.1. https://CRAN.R-project.org/package=readr |
readxl | Hadley Wickham and Jennifer Bryan (2022). readxl: Read Excel Files. R package version 1.4.0. https://CRAN.R-project.org/package=readxl |
rebird | Rafael Maia, Scott Chamberlain, Andy Teucher and Sebastian Pardo (2021). rebird: R Client for the eBird Database of Bird Observations. R package version 1.3.0. https://CRAN.R-project.org/package=rebird |
recipes | Max Kuhn and Hadley Wickham (2022). recipes: Preprocessing and Feature Engineering Steps for Modeling. R package version 0.2.0. https://CRAN.R-project.org/package=recipes |
rematch | Gabor Csardi (2016). rematch: Match Regular Expressions with a Nicer ‘API’. R package version 1.0.1. https://CRAN.R-project.org/package=rematch |
rematch2 | Gábor Csárdi (2020). rematch2: Tidy Output from Regular Expression Matching. R package version 2.1.2. https://CRAN.R-project.org/package=rematch2 |
remotes | Gábor Csárdi, Jim Hester, Hadley Wickham, Winston Chang, Martin Morgan and Dan Tenenbaum (2021). remotes: R Package Installation from Remote Repositories, Including ‘GitHub’. R package version 2.4.2. https://CRAN.R-project.org/package=remotes |
repr | Philipp Angerer, Thomas Kluyver and Jan Schulz (2022). repr: Serializable Representations. R package version 1.1.4. https://CRAN.R-project.org/package=repr |
reprex | Jennifer Bryan, Jim Hester, David Robinson and Hadley Wickham (2021). reprex: Prepare Reproducible Example Code via the Clipboard. R package version 2.0.1. https://CRAN.R-project.org/package=reprex |
reshape | H. Wickham. Reshaping data with the reshape package. Journal of Statistical Software, 21(12), 2007. |
reshape2 | Hadley Wickham (2007). Reshaping Data with the reshape Package. Journal of Statistical Software, 21(12), 1-20. URL http://www.jstatsoft.org/v21/i12/. |
rex | Kevin Ushey, Jim Hester and Robert Krzyzanowski (2021). rex: Friendly Regular Expressions. R package version 1.2.1. https://CRAN.R-project.org/package=rex |
rgbif | Chamberlain S, Barve V, Mcglinn D, Oldoni D, Desmet P, Geffert L, Ram K (2022). _rgbif: Interface to the Global Biodiversity Information Facility API_. R package version 3.7.2, <URL: https://CRAN.R-project.org/package=rgbif>. Chamberlain S, Boettiger C (2017). “R Python, and Ruby clients for GBIF species occurrence data.” _PeerJ PrePrints_. <URL: https://doi.org/10.7287/peerj.preprints.3304v1>. |
rgdal | Roger Bivand, Tim Keitt and Barry Rowlingson (2019). rgdal: Bindings for the ‘Geospatial’ Data Abstraction Library. R package version 1.4-8. https://CRAN.R-project.org/package=rgdal |
rgeos | Roger Bivand and Colin Rundel (2020). rgeos: Interface to Geometry Engine – Open Source (‘GEOS’). R package version 0.5-3. https://CRAN.R-project.org/package=rgeos |
RgoogleMaps | Markus Loecher and Karl Ropkins (2015). RgoogleMaps and loa: Unleashing R Graphics Power on Map Tiles. Journal of Statistical Software 63(4), 1-18. URL http://www.jstatsoft.org/v63/i04/. |
rhub | Gábor Csárdi and Maëlle Salmon (2019). rhub: Connect to ‘R-hub’. R package version 1.1.1. https://CRAN.R-project.org/package=rhub |
ridigbio | Francois Michonneau and Matthew Collins (2017). ridigbio: Interface to the iDigBio Data API. R package version 0.3.5. https://CRAN.R-project.org/package=ridigbio |
rio | Chung-hong Chan, Geoffrey CH Chan, Thomas J. Leeper, and Jason Becker (2021). rio: A Swiss-army knife for data file I/O. R package version 0.5.29. |
rJava | Simon Urbanek (2021). rJava: Low-Level R to Java Interface. R package version 1.0-6. https://CRAN.R-project.org/package=rJava |
rjson |
Alex Couture-Beil (2022). rjson: JSON for R. R package version 0.2.21. |
rlang | Lionel Henry and Hadley Wickham (2022). rlang: Functions for Base Types and Core R and ‘Tidyverse’ Features. R package version 1.0.2. https://CRAN.R-project.org/package=rlang |
rmarkdown | Yihui Xie and J.J. Allaire and Garrett Grolemund (2018). R Markdown: The Definitive Guide. Chapman and Hall/CRC. ISBN 9781138359338. URL https://bookdown.org/yihui/rmarkdown. Yihui Xie and Christophe Dervieux and Emily Riederer (2020). R Markdown Cookbook. Chapman and Hall/CRC. ISBN 9780367563837. URL https://bookdown.org/yihui/rmarkdown-cookbook. |
rms | Frank E Harrell Jr (2021). rms: Regression Modeling Strategies. R package version 6.2-0. https://CRAN.R-project.org/package=rms |
RMySQL | Jeroen Ooms, David James, Saikat DebRoy, Hadley Wickham and Jeffrey Horner (2021). RMySQL: Database Interface and ‘MySQL’ Driver for R. R package version 0.10.23. https://CRAN.R-project.org/package=RMySQL |
RODBC | Brian Ripley and Michael Lapsley (2021). RODBC: ODBC Database Access. R package version 1.3-19. https://CRAN.R-project.org/package=RODBC |
roxygen2 | Hadley Wickham, Peter Danenberg, Gábor Csárdi and Manuel Eugster (2021). roxygen2: In-Line Documentation for R. R package version 7.1.2. https://CRAN.R-project.org/package=roxygen2 |
rpart | Terry Therneau and Beth Atkinson (2022). rpart: Recursive Partitioning and Regression Trees. R package version 4.1.16. https://CRAN.R-project.org/package=rpart |
RPostgreSQL | Joe Conway, Dirk Eddelbuettel, Tomoaki Nishiyama, Sameer Kumar Prayaga and Neil Tiffin (2021). RPostgreSQL: R Interface to the ‘PostgreSQL’ Database System. R package version 0.7-3. https://CRAN.R-project.org/package=RPostgreSQL |
rprojroot | Kirill Müller (2022). rprojroot: Finding Files in Project Subdirectories. R package version 2.0.3. https://CRAN.R-project.org/package=rprojroot |
rsample | Julia Silge, Fanny Chow, Max Kuhn and Hadley Wickham (2021). rsample: General Resampling Infrastructure. R package version 0.1.1. https://CRAN.R-project.org/package=rsample |
RSQLite | Kirill Müller, Hadley Wickham, David A. James and Seth Falcon (2022). RSQLite: SQLite Interface for R. R package version 2.2.14. https://CRAN.R-project.org/package=RSQLite |
rstudioapi | Kevin Ushey, JJ Allaire, Hadley Wickham and Gary Ritchie (2020). rstudioapi: Safely Access the RStudio API. R package version 0.13. https://CRAN.R-project.org/package=rstudioapi |
RUnit | Matthias Burger, Klaus Juenemann and Thomas Koenig (2018). RUnit: R Unit Test Framework. R package version 0.4.32. https://CRAN.R-project.org/package=Runit |
rversions | Gábor Csárdi (2021). rversions: Query ‘R’ Versions, Including ‘r-release’ and ‘r-oldrel’. R package version 2.1.1. https://CRAN.R-project.org/package=rversions |
rvertnet | Scott Chamberlain (2021). rvertnet: Search ‘Vertnet’, a ‘Database’ of Vertebrate Specimen Records. R package version 0.8.2. https://CRAN.R-project.org/package=rvertnet |
rvest | Hadley Wickham (2021). rvest: Easily Harvest (Scrape) Web Pages. R package version 1.0.2. https://CRAN.R-project.org/package=rvest |
s2 | Dewey Dunnington, Edzer Pebesma and Ege Rubak (2021). s2: Spherical Geometry Operators Using the S2 Geometry Library. R package version 1.0.7. https://CRAN.R-project.org/package=s2 |
sandwich | Zeileis A, Köll S, Graham N (2020). “Various Versatile Variances: An Object-Oriented Implementation of Clustered Covariances in R.” _Journal of Statistical Software_, *95*(1), 1-36. doi: 10.18637/jss.v095.i01 (URL: https://doi.org/10.18637/jss.v095.i01). If sandwich is applied to lm() models, please also cite: Zeileis A (2004). “Econometric Computing with HC and HAC Covariance Matrix Estimators.” _Journal of Statistical Software_, *11*(10), 1-17. doi: 10.18637/jss.v011.i10 (URL: https://doi.org/10.18637/jss.v011.i10). If sandwich is applied to models other than lm(), please also cite: Zeileis A (2006). “Object-Oriented Computation of Sandwich Estimators.” _Journal of Statistical Software_, *16*(9), 1-16. doi: 10.18637/jss.v016.i09 (URL: https://doi.org/10.18637/jss.v016.i09). |
sass | Joe Cheng, Timothy Mastny, Richard Iannone, Barret Schloerke and Carson Sievert (2022). sass: Syntactically Awesome Style Sheets (‘Sass’). R package version 0.4.1. https://CRAN.R-project.org/package=sass |
scales | Hadley Wickham and Dana Seidel (2022). scales: Scale Functions for Visualization. R package version 1.2.0. https://CRAN.R-project.org/package=scales |
SDMTools | VanDerWal J, Falconi A, Januchowski S, Shoo L and Storlie C (2014). SDMTools. http://www.rforge.net/SDMTools/ |
selectr | Potter S (2012). “Introducing the selectr Package.” The University of Auckland, Auckland, New Zealand. <URL: http://stattech.wordpress.fos.auckland.ac.nz/2012-10-introducing-the-selectr-package/>. |
sessioninfo | Hadley Wickham, Winston Chang, Robert Flight, Kirill Müller and Jim Hester (2021). sessioninfo: R Session Information. R package version 1.2.2. https://CRAN.R-project.org/package=sessioninfo |
sf | Pebesma, E., 2018. Simple Features for R: Standardized Support for Spatial Vector Data. The R Journal 10 (1), 439-446, https://doi.org/10.32614/RJ-2018-009 |
sfheaders | David Cooley (2020). sfheaders: Converts Between R Objects and Simple Feature Objects. R package version 0.4.0. https://CRAN.R-project.org/package=sfheaders |
sgeostat | S original by James J. Majure Iowa State University and R port + extensions by Albrecht Gebhardt (2016). sgeostat: An Object-Oriented Framework for Geostatistical Modeling in S+. R package version 1.0-27. https://CRAN.R-project.org/package=sgeostat |
shape | Karline Soetaert (2021). shape: Functions for Plotting Graphical Shapes, Colors. R package version 1.4.6. https://CRAN.R-project.org/package=shape |
shiny | Winston Chang, Joe Cheng, JJ Allaire, Carson Sievert, Barret Schloerke, Yihui Xie, Jeff Allen, Jonathan McPherson, Alan Dipert and Barbara Borges (2021). shiny: Web Application Framework for R. R package version 1.7.1. https://CRAN.R-project.org/package=shiny |
slider | Davis Vaughan (2021). slider: Sliding Window Functions. R package version 0.2.2. https://CRAN.R-project.org/package=slider |
snow | Luke Tierney, A. J. Rossini, Na Li and H. Sevcikova (2021). snow: Simple Network of Workstations. R package version 0.4-4. https://CRAN.R-project.org/package=snow |
snowfall | Jochen Knaus (2015). snowfall: Easier cluster computing (based on snow).. R package version 1.84-6.1. https://CRAN.R-project.org/package=snowfall |
sourcetools | Kevin Ushey (2018). sourcetools: Tools for Reading, Tokenizing and Parsing R Code. R package version 0.1.7. https://CRAN.R-project.org/package=sourcetools |
sp | Pebesma, E.J., R.S. Bivand, 2005. Classes and methods for spatial data in R. R News 5 (2), https://cran.r-project.org/doc/Rnews/. Roger S. Bivand, Edzer Pebesma, Virgilio Gomez-Rubio, 2013. Applied spatial data analysis with R, Second edition. Springer, NY. https://asdar-book.org/ |
spacetime | Edzer Pebesma (2012). spacetime: Spatio-Temporal Data in R. Journal of Statistical Software, 51(7), 1-30. URL https://www.jstatsoft.org/v51/i07/. Roger S. Bivand, Edzer Pebesma, Virgilio Gomez-Rubio, 2013. Applied spatial data analysis with R, Second edition. Springer, NY. https://asdar-book.org/ |
spam | Furrer, R., Flury R. and Gerber, F. (2022). spam: SPArse Matrix. R package version 2.8-0. URL https://CRAN.R-project.org/package=spam Reinhard Furrer, Stephan R. Sain (2010). spam: A Sparse Matrix R Package with Emphasis on MCMC Methods for Gaussian Markov Random Fields. Journal of Statistical Software, 36(10), 1-25. https://doi.org/10.18637/jss.v036.i10. Florian Gerber, Reinhard Furrer (2015). Pitfalls in the Implementation of Bayesian Hierarchical Modeling of Areal Count Data: An Illustration Using BYM and Leroux Models. Journal of Statistical Software, Code Snippets, 63(1), 1-32. https://doi.org/10.18637/jss.v063.c01. F. Gerber, K. Moesinger, R. Furrer (2017), Extending R packages to support 64-bit compiled code: An illustration with spam64 and GIMMS NDVI3g data. Computer & Geoscience 104, 109-119, https://doi.org/10.1016/j.cageo.2016.11.015. |
SparseM | Roger Koenker (2021). SparseM: Sparse Linear Algebra. R package version 1.81. https://CRAN.R-project.org/package=SparseM |
spatial | Venables, W. N. & Ripley, B. D. (2002) Modern Applied Statistics with S. Fourth Edition. Springer, New York. ISBN 0-387-95457-0 |
spatialwidget | David Cooley (2020). spatialwidget: Formats Spatial Data for Use in Htmlwidgets. R package version 0.2.3. https://CRAN.R-project.org/package=spatialwidget |
spatstat | Adrian Baddeley, Ege Rubak, Rolf Turner (2015). Spatial Point Patterns: Methodology and Applications with R. London: Chapman and Hall/CRC Press, 2015. URL https://www.routledge.com/Spatial-Point-Patterns-Methodology-and-Applications-with-R/Baddeley-Rubak-Turner/9781482210200/ If you use hybrid models, please also cite: Adrian Baddeley, Rolf Turner, Jorge Mateu, Andrew Bevan (2013). Hybrids of Gibbs Point Process Models and Their Implementation. Journal of Statistical Software, 55(11), 1-43. DOI: 10.18637/jss.v055.i11 In survey articles, please cite the original paper on spatstat: Adrian Baddeley, Rolf Turner (2005). spatstat: An R Package for Analyzing Spatial Point Patterns. Journal of Statistical Software 12(6), 1-42. DOI: 10.18637/jss.v012.i06 |
spatstat.core | Adrian Baddeley, Ege Rubak, Rolf Turner (2015). Spatial Point Patterns: Methodology and Applications with R. London: Chapman and Hall/CRC Press, 2015. URL https://www.routledge.com/Spatial-Point-Patterns-Methodology-and-Applications-with-R/Baddeley-Rubak-Turner/9781482210200/ |
spatstat.data | Adrian Baddeley, Rolf Turner and Ege Rubak (2022). spatstat.data: Datasets for ‘spatstat’ Family. R package version 2.2-0. https://CRAN.R-project.org/package=spatstat.data |
spatstat.geom | Adrian Baddeley, Ege Rubak, Rolf Turner (2015). Spatial Point Patterns: Methodology and Applications with R. London: Chapman and Hall/CRC Press, 2015. URL https://www.routledge.com/Spatial-Point-Patterns-Methodology-and-Applications-with-R/Baddeley-Rubak-Turner/9781482210200/ |
spatstat.linnet | Adrian Baddeley, Ege Rubak, Rolf Turner (2015). Spatial Point Patterns: Methodology and Applications with R. London: Chapman and Hall/CRC Press, 2015. URL https://www.routledge.com/Spatial-Point-Patterns-Methodology-and-Applications-with-R/Baddeley-Rubak-Turner/9781482210200/ |
spatstat.sparse | Adrian Baddeley, Rolf Turner and Ege Rubak (2022). spatstat.sparse: Sparse Three-Dimensional Arrays and Linear Algebra Utilities. R package version 2.1-1. https://CRAN.R-project.org/package=spatstat.sparse |
spatstat.utils | Adrian Baddeley, Rolf Turner and Ege Rubak (2022). spatstat.utils: Utility Functions for ‘spatstat’. R package version 2.3-1. https://CRAN.R-project.org/package=spatstat.utils |
spelling | Jeroen Ooms and Jim Hester (2020). spelling: Tools for Spell Checking in R. R package version 2.2. https://CRAN.R-project.org/package=spelling |
splancs | Barry Rowlingson and Peter Diggle (2022). splancs: Spatial and Space-Time Point Pattern Analysis. R package version 2.01-43. https://CRAN.R-project.org/package=splancs |
splines | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
spocc | Scott Chamberlain (2021). spocc: Interface to Species Occurrence Data Sources. R package version 1.2.0. https://CRAN.R-project.org/package=spocc |
spThin | Aiello-Lammens, M. E., Boria, R. A., Radosavljevic, A. , Vilela, B. and Anderson, R. P. (2015). spThin: an R package for spatial thinning of species occurrence records for use in ecological niche models. Ecography, 38: 541-545. URL https://onlinelibrary.wiley.com/doi/10.1111/ecog.01132. |
SQUAREM | Du Y, Varadhan R (2020). “SQUAREM: An R Package for Off-the-Shelf Acceleration of EM, MM and Other EM-Like Monotone Algorithms.” _Journal of Statistical Software_, *92*(7), 1-41. doi: 10.18637/jss.v092.i07 (URL: https://doi.org/10.18637/jss.v092.i07). |
stars | Edzer Pebesma (2021). stars: Spatiotemporal Arrays, Raster and Vector Data Cubes. R package version 0.5-5. https://CRAN.R-project.org/package=stars |
statmod | Giner, G, and Smyth, GK (2016). statmod: probability calculations for the inverse Gaussian distribution. R Journal 8(1), 339-351. (pinvgauss, qinvgauss, dinvguass and rinvgauss functions) Phipson B, and Smyth GK (2010). Permutation p-values should never be zero: calculating exact p-values when permutations are randomly drawn. Statistical Applications in Genetics and Molecular Biology, Volume 9, Issue 1, Article 39. (permp function) Hu, Y, and Smyth, GK (2009). ELDA: Extreme limiting dilution analysis for comparing depleted and enriched populations in stem cell and other assays. Journal of Immunological Methods 347, 70-78. (elda and limdil functions) Smyth, G. K. (1998). Optimization and nonlinear equations. In: Encyclopedia of Biostatistics, P. Armitage and T. Colton (eds.), Wiley, London, pp. 3174-3180. (glmgam.fit, glmnb.fit and fitNBP functions) Smyth, G. K. (1998). Numerical integration. In: Encyclopedia of Biostatistics, P. Armitage and T. Colton (eds.), Wiley, London, pp. 3088-3095. (gauss.quad and gauss.quad.prob functions) Smyth, G. K. (2002). An efficient algorithm for REML in heteroscedastic regression. Journal of Computational and Graphical Statistics 11, 836-847. (remlscore, randomizedBlock, and mixedModel2 functions) Dunn, P. K., and Smyth, G. K. (1996). Randomized quantile residuals. J. Comput. Graph. Statist., 5, 236-244. (qresid functions) |
stats | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
stats4 | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
stringdist | van der Loo M (2014). “The stringdist package for approximate string matching.” _The R Journal_, *6*, 111-122. <URL: https://CRAN.R-project.org/package=stringdist>. |
stringi | Gagolewski M (2021). “stringi: Fast and portable character string processing in R.” _Journal of Statistical Software_. to appear. Gagolewski M (2021). _stringi: Fast and portable character string processing in R_. R package version 1.7.6, <URL: https://stringi.gagolewski.com/>. |
stringr | Hadley Wickham (2019). stringr: Simple, Consistent Wrappers for Common String Operations. R package version 1.4.0. https://CRAN.R-project.org/package=stringr |
survival | Therneau T (2022). _A Package for Survival Analysis in R_. R package version 3.3-1, <URL: https://CRAN.R-project.org/package=survival>. Terry M. Therneau, Patricia M. Grambsch (2000). _Modeling Survival Data: Extending the Cox Model_. Springer, New York. ISBN 0-387-98784-3. |
svglite | Hadley Wickham, Lionel Henry, Thomas Lin Pedersen, T Jake Luciani, Matthieu Decorde and Vaudor Lise (2022). svglite: An ‘SVG’ Graphics Device. R package version 2.1.0. https://CRAN.R-project.org/package=svglite |
svMisc | Grosjean, Ph. (2022). SciViews-R. UMONS, Mons, Belgium. URL https://www.sciviews.org/SciViews-R/. |
sys | Jeroen Ooms (2020). sys: Powerful and Reliable Tools for Running System Commands in R. R package version 3.4. https://CRAN.R-project.org/package=sys |
systemfonts | Thomas Lin Pedersen, Jeroen Ooms and Devon Govett (2022). systemfonts: System Native Font Finding. R package version 1.0.4. https://CRAN.R-project.org/package=systemfonts |
tcltk | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
TeachingDemos | Greg Snow (2020). TeachingDemos: Demonstrations for Teaching and Learning. R package version 2.12. https://CRAN.R-project.org/package=TeachingDemos |
tensor | Jonathan Rougier (2012). tensor: Tensor product of arrays. R package version 1.5. https://CRAN.R-project.org/package=tensor |
terra | Robert J. Hijmans (2022). terra: Spatial Data Analysis. R package version 1.5-21. https://CRAN.R-project.org/package=terra |
testthat | Hadley Wickham. testthat: Get Started with Testing. The R Journal, vol. 3, no. 1, pp. 5–10, 2011 |
TH.data | Torsten Hothorn (2022). TH.data: TH’s Data Archive. R package version 1.1-1. https://CRAN.R-project.org/package=TH.data |
tibble | Kirill Müller and Hadley Wickham (2022). tibble: Simple Data Frames. R package version 3.1.7. https://CRAN.R-project.org/package=tibble |
tidymodels | Kuhn et al., (2020). Tidymodels: a collection of packages for modeling and machine learning using tidyverse principles. https://www.tidymodels.org |
tidyr | Hadley Wickham and Maximilian Girlich (2022). tidyr: Tidy Messy Data. R package version 1.2.0. https://CRAN.R-project.org/package=tidyr |
tidyselect | Lionel Henry and Hadley Wickham (2022). tidyselect: Select from a Set of Strings. R package version 1.1.2. https://CRAN.R-project.org/package=tidyselect |
tidyverse | Wickham et al., (2019). Welcome to the tidyverse. Journal of Open Source Software, 4(43), 1686, https://doi.org/10.21105/joss.01686 |
timeDate | Diethelm Wuertz, Tobias Setz, Yohan Chalabi, Martin Maechler and Joe W. Byers (2018). timeDate: Rmetrics – Chronological and Calendar Objects. R package version 3043.102. https://CRAN.R-project.org/package=timeDate |
tinytex | Yihui Xie (2022). tinytex: Helper Functions to Install and Maintain TeX Live, and Compile LaTeX Documents. R package version 0.38. Yihui Xie (2019) TinyTeX: A lightweight, cross-platform, and easy-to-maintain LaTeX distribution based on TeX Live. TUGboat 40 (1): 30–32. https://tug.org/TUGboat/Contents/contents40-1.html |
tmap | Tennekes M (2018). “tmap: Thematic Maps in R.” _Journal of Statistical Software_, *84*(6), 1-39. doi: 10.18637/jss.v084.i06 (URL: https://doi.org/10.18637/jss.v084.i06). |
tmaptools | Martijn Tennekes (2021). tmaptools: Thematic Map Tools. R package version 3.1-1. https://CRAN.R-project.org/package=tmaptools |
tools | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
triebeard | Oliver Keyes, Drew Schmidt and Yuuki Takano (2016). triebeard: ‘Radix’ Trees in ‘Rcpp’. R package version 0.3.0. https://CRAN.R-project.org/package=triebeard |
tripack | Fortran code by R. J. Renka. R functions by Albrecht Gebhardt. With contributions from Stephen Eglen <stephen@anc.ed.ac.uk>, Sergei Zuyev and Denis White (2020). tripack: Triangulation of Irregularly Spaced Data. R package version 1.3-9.1. https://CRAN.R-project.org/package=tripack |
tseries | Adrian Trapletti and Kurt Hornik (2022). tseries: Time Series Analysis and Computational Finance. R package version 0.10-51. |
TTR | Joshua Ulrich (2021). TTR: Technical Trading Rules. R package version 0.24.3. https://CRAN.R-project.org/package=TTR |
tune | Max Kuhn (2022). tune: Tidy Tuning Tools. R package version 0.2.0. https://CRAN.R-project.org/package=tune |
tzdb | Davis Vaughan (2022). tzdb: Time Zone Database Information. R package version 0.3.0. https://CRAN.R-project.org/package=tzdb |
ucminf | Hans Bruun Nielsen and Stig Bousgaard Mortensen (2016). ucminf: General-Purpose Unconstrained Non-Linear Optimization. R package version 1.1-4. https://CRAN.R-project.org/package=ucminf |
units | Pebesma E, Mailund T, Hiebert J (2016). “Measurement Units in R.” _R Journal_, *8*(2), 486-494. doi: 10.32614/RJ-2016-061 (URL: https://doi.org/10.32614/RJ-2016-061). |
urca | Pfaff, B. (2008) Analysis of Integrated and Cointegrated Time Series with R. Second Edition. Springer, New York. ISBN 0-387-27960-1 |
urltools | Os Keyes, Jay Jacobs, Drew Schmidt, Mark Greenaway, Bob Rudis, Alex Pinto, Maryam Khezrzadeh, Peter Meilstrup, Adam M. Costello, Jeff Bezanson, Peter Meilstrup and Xueyuan Jiang (2019). urltools: Vectorised Tools for URL Handling and Parsing. R package version 1.7.3. https://CRAN.R-project.org/package=urltools |
usdm | Naimi B, Hamm Na, Groen TA, Skidmore AK, Toxopeus AG (2014). “Where is positional uncertainty a problem for species distribution modelling.” _Ecography_, *37*, 191-203. doi: 10.1111/j.1600-0587.2013.00205.x (URL: https://doi.org/10.1111/j.1600-0587.2013.00205.x). |
usethis | Hadley Wickham, Jennifer Bryan and Malcolm Barrett (2021). usethis: Automate Package and Project Setup. R package version 2.1.5. https://CRAN.R-project.org/package=usethis |
utf8 | Patrick O. Perry (2021). utf8: Unicode Text Processing. R package version 1.2.2. https://CRAN.R-project.org/package=utf8 |
utils | R Core Team (2022). R: A language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria. URL https://www.R-project.org/. |
uuid | Simon Urbanek and Theodore Ts’o (2022). uuid: Tools for Generating and Handling of UUIDs. R package version 1.1-0. https://CRAN.R-project.org/package=uuid |
vctrs | Hadley Wickham, Lionel Henry and Davis Vaughan (2022). vctrs: Vector Helpers. R package version 0.4.1. https://CRAN.R-project.org/package=vctrs |
vdiffr | Lionel Henry, Thomas Lin Pedersen, T Jake Luciani, Matthieu Decorde and Vaudor Lise (2022). vdiffr: Visual Regression Testing and Graphical Diffing. R package version 1.0.4. https://CRAN.R-project.org/package=vdiffr |
vegan | Jari Oksanen, Gavin L. Simpson, F. Guillaume Blanchet, Roeland Kindt, Pierre Legendre, Peter R. Minchin, R.B. O’Hara, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs, Helene Wagner, Matt Barbour, Michael Bedward, Ben Bolker, Daniel Borcard, Gustavo Carvalho, Michael Chirico, Miquel De Caceres, Sebastien Durand, Heloisa Beatriz Antoniazi Evangelista, Rich FitzJohn, Michael Friendly, Brendan Furneaux, Geoffrey Hannigan, Mark O. Hill, Leo Lahti, Dan McGlinn, Marie-Helene Ouellette, Eduardo Ribeiro Cunha, Tyler Smith, Adrian Stier, Cajo J.F. Ter Braak and James Weedon (2022). vegan: Community Ecology Package. R package version 2.6-2. https://CRAN.R-project.org/package=vegan |
viridis | Simon Garnier, Noam Ross, Robert Rudis, Antônio P. Camargo, Marco Sciaini, and Cédric Scherer (2021). Rvision – Colorblind-Friendly Color Maps for R. R package version 0.6.2. |
viridisLite | Simon Garnier, Noam Ross, Robert Rudis, Antônio P. Camargo, Marco Sciaini, and Cédric Scherer (2021). Rvision – Colorblind-Friendly Color Maps for R. R package version 0.4.0. |
visreg | Breheny P and Burchett W (2017). Visualization of Regression Models Using visreg. The R Journal, 9: 56-71. |
vroom | Jim Hester, Hadley Wickham and Jennifer Bryan (2021). vroom: Read and Write Rectangular Text Data Quickly. R package version 1.5.7. https://CRAN.R-project.org/package=vroom |
waldo | Hadley Wickham (2022). waldo: Find Differences Between R Objects. R package version 0.4.0. https://CRAN.R-project.org/package=waldo |
warp | Davis Vaughan (2020). warp: Group Dates. R package version 0.2.0. https://CRAN.R-project.org/package=warp |
wellknown | Scott Chamberlain and Os Keyes (2021). wellknown: Convert Between ‘WKT’ and ‘GeoJSON’. R package version 0.7.4. https://CRAN.R-project.org/package=wellknown |
whisker | Edwin de Jonge (2019). whisker: {{mustache}} for R, Logicless Templating. R package version 0.4. https://CRAN.R-project.org/package=whisker |
whoami | Gábor Csárdi (2019). whoami: Username, Full Name, Email Address, ‘GitHub’ Username of the Current User. R package version 1.3.0. https://CRAN.R-project.org/package=whoami |
widgetframe | Bhaskar Karambelkar (2017). widgetframe: ‘Htmlwidgets’ in Responsive ‘iframes’. R package version 0.3.1. https://CRAN.R-project.org/package=widgetframe |
withr | Jim Hester, Lionel Henry, Kirill Müller, Kevin Ushey, Hadley Wickham and Winston Chang (2022). withr: Run Code ‘With’ Temporarily Modified Global State. R package version 2.5.0. https://CRAN.R-project.org/package=withr |
wk | Dewey Dunnington and Edzer Pebesma (2022). wk: Lightweight Well-Known Geometry Parsing. R package version 0.6.0. https://CRAN.R-project.org/package=wk |
workflows | Davis Vaughan (2022). workflows: Modeling Workflows. R package version 0.2.6. https://CRAN.R-project.org/package=workflows |
workflowsets | Max Kuhn (2022). workflowsets: Create a Collection of ‘tidymodels’ Workflows. R package version 0.2.1. https://CRAN.R-project.org/package=workflowsets |
writexl | Jeroen Ooms (2021). writexl: Export Data Frames to Excel ‘xlsx’ Format. R package version 1.4.0. https://CRAN.R-project.org/package=writexl |
xfun | Yihui Xie (2022). xfun: Supporting Functions for Packages Maintained by ‘Yihui Xie’. R package version 0.31. https://CRAN.R-project.org/package=xfun |
XML | Duncan Temple Lang (2022). XML: Tools for Parsing and Generating XML Within R and S-Plus. R package version 3.99-0.9. https://CRAN.R-project.org/package=XML |
xml2 | Hadley Wickham, Jim Hester and Jeroen Ooms (2021). xml2: Parse XML. R package version 1.3.3. https://CRAN.R-project.org/package=xml2 |
xmlparsedata | Gábor Csárdi (2021). xmlparsedata: Parse Data of ‘R’ Code as an ‘XML’ Tree. R package version 1.0.5. https://CRAN.R-project.org/package=xmlparsedata |
xopen | Gábor Csárdi, Fathi Boudra, Rex Dieter, Kevin Krammer and Jeremy White (2018). xopen: Open System Files, ‘URLs’, Anything. R package version 1.0.0. https://CRAN.R-project.org/package=xopen |
xtable | David B. Dahl, David Scott, Charles Roosen, Arni Magnusson and Jonathan Swinton (2019). xtable: Export Tables to LaTeX or HTML. R package version 1.8-4. https://CRAN.R-project.org/package=xtable |
xts | Jeffrey A. Ryan and Joshua M. Ulrich (2020). xts: eXtensible Time Series. R package version 0.12.1. https://CRAN.R-project.org/package=xts |
yaml | Shawn P Garbett, Jeremy Stephens, Kirill Simonov, Yihui Xie, Zhuoer Dong, Hadley Wickham, Jeffrey Horner, reikoch, Will Beasley, Brendan O’Connor, Gregory R. Warnes, Michael Quinn and Zhian N. Kamvar (2022). yaml: Methods to Convert R Data to YAML and Back. R package version 2.3.5. https://CRAN.R-project.org/package=yaml |
yardstick | Max Kuhn and Davis Vaughan (2021). yardstick: Tidy Characterizations of Model Performance. R package version 0.0.9. https://CRAN.R-project.org/package=yardstick |
zeallot | Nathan Teetor (2018). zeallot: Multiple, Unpacking, and Destructuring Assignment. R package version 0.1.0. https://CRAN.R-project.org/package=zeallot |
zip | Gábor Csárdi, Kuba Podgórski and Rich Geldreich (2021). zip: Cross-Platform ‘zip’ Compression. R package version 2.2.0. https://CRAN.R-project.org/package=zip |
zoo | Achim Zeileis and Gabor Grothendieck (2005). zoo: S3 Infrastructure for Regular and Irregular Time Series. Journal of Statistical Software, 14(6), 1-27. doi:10.18637/jss.v014.i06. https://www.jstatsoft.org/article/view/v014i06 |
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